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1

Genome-wide Association Study of Vitamin B6, Vitamin B12, Folate, and Homocysteine Blood Concentrations

Toshiko Tanaka, Paul Scheet, Betti Giusti, Stefania Bandinelli, Maria Grazia Piras, Gianluca Usala, Sandra Lai, Antonella Mulas, Anna Maria Corsi, Anna Vestrini, Francesco Sofi, Anna Maria Gori, Rosan

Journal:

The American Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 368 KB

english, 2009

2

A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data

Hu, Hao, Roach, Jared C, Coon, Hilary, Guthery, Stephen L, Voelkerding, Karl V, Margraf, Rebecca L, Durtschi, Jacob D, Tavtigian, Sean V, Shankaracharya,, Wu, Wilfred, Scheet, Paul, Wang, Shuoguo, Xi

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.46 MB

english, 2014

3

The Emperor’s New Clothes: Prospective Observational Evaluation of the Association between Initial Vancomycin Exposure and Failure Rates among Adult Hospitalized Patients with MRSA Bloodstream Infections (PROVIDE)

Lodise, Thomas P, Rosenkranz, Susan L, Finnemeyer, Matthew, Evans, Scott, Sims, Matthew, Zervos, Marcus J, Creech, C Buddy, Patel, Pratish C, Keefer, Michael, Riska, Paul, Silveira, Fernanda P, Scheet

Journal:

Clinical Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 952 KB

english, 2019

4

STrengthening the REporting of Genetic Association Studies (STREGA)—an extension of the STROBE statement

Julian Little, Julian P. T. Higgins, John P. A. Ioannidis, David Moher, France Gagnon, Erik von Elm, Muin J. Khoury, Barbara Cohen, George Davey-Smith, Jeremy Grimshaw, Paul Scheet, Marta Gwinn, Robin

Journal:

Genetic Epidemiology

Year:

2009

Language:

english

File:

PDF, 179 KB

english, 2009

5

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

Yun Li, Cristen J. Willer, Jun Ding, Paul Scheet, Gonçalo R. Abecasis

Journal:

Genetic Epidemiology

Year:

2010

Language:

english

File:

PDF, 508 KB

english, 2010

6

A comparison of approaches to account for uncertainty in analysis of imputed genotypes

Jin Zheng, Yun Li, Gonçalo R. Abecasis, Paul Scheet

Journal:

Genetic Epidemiology

Year:

2011

Language:

english

File:

PDF, 172 KB

english, 2011

7

Haploscope: a tool for the graphical display of haplotype structure in populations

F. Anthony San Lucas, Noah A. Rosenberg, Paul Scheet

Journal:

Genetic Epidemiology

Year:

2012

Language:

english

File:

PDF, 188 KB

english, 2012

8

Comparison of marker types and map assumptions using Markov chain Monte Carlo-based linkage analysis of COGA data

Weiva Sieh, Saonli Basu, Audrey Q Fu, Joseph H Rothstein, Paul A Scheet, William CL Stewart, Yun J Sung, Elizabeth A Thompson, Ellen M Wijsman

Journal:

Year:

2005

Language:

english

File:

PDF, 507 KB

english, 2005

9

Effects of laboratory versus field exercise on leukocyte subsets and cell adhesion molecule expression in children

Christy J. Perez, Dan Nemet, Paul J. Mills, Timothy P. Scheet, Michael G. Ziegler, Dan M. Cooper

Journal:

European Journal of Applied Physiology

Year:

2001

Language:

english

File:

PDF, 97 KB

english, 2001

10

Strengthening the reporting of genetic association studies (STREGA): an extension of the STROBE Statement

Julian Little, Julian P. T. Higgins, John P. A. Ioannidis, David Moher, France Gagnon, Erik von Elm, Muin J. Khoury, Barbara Cohen, George Davey-Smith, Jeremy Grimshaw, Paul Scheet, Marta Gwinn, Robin

Journal:

Year:

2009

Language:

english

File:

PDF, 312 KB

english, 2009

11

Strengthening the reporting of genetic association studies (STREGA): an extension of the STROBE statement

Julian Little, Julian P. T. Higgins, John P. A. Ioannidis, David Moher, France Gagnon, Erik von Elm, Muin J. Khoury, Barbara Cohen, George Davey-Smith, Jeremy Grimshaw, Paul Scheet, Marta Gwinn, Robin

Journal:

European Journal of Epidemiology

Year:

2009

Language:

english

File:

PDF, 255 KB

english, 2009

12

STrengthening the REporting of Genetic Association studies (STREGA) – an extension of the STROBE statement

Julian Little, Julian P.T. Higgins, John P.A. Ioannidis, David Moher, France Gagnon, Erik Von Elm, Muin J. Khoury, Barbara Cohen, George Davey-Smith, Jeremy Grimshaw, Paul Scheet, Marta Gwinn, Robin E

Journal:

European Journal of Clinical Investigation

Year:

2009

Language:

english

File:

PDF, 158 KB

english, 2009

13

Genotype, haplotype and copy-number variation in worldwide human populations

Jakobsson, Mattias, Scholz, Sonja W., Scheet, Paul, Gibbs, J. Raphael, VanLiere, Jenna M., Fung, Hon-Chung, Szpiech, Zachary A., Degnan, James H., Wang, Kai, Guerreiro, Rita

Journal:

Year:

2008

Language:

english

File:

PDF, 1.52 MB

english, 2008

14

Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia

Yang, Jun J, Cheng, Cheng, Devidas, Meenakshi, Cao, Xueyuan, Fan, Yiping, Campana, Dario, Yang, Wenjian, Neale, Geoff, Cox, Nancy J, Scheet, Paul

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 509 KB

english, 2011

15

Automating sequence-based detection and genotyping of SNPs from diploid samples

Stephens, Matthew, Sloan, James S, Robertson, P D, Scheet, Paul, Nickerson, Deborah A

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 543 KB

english, 2006

16

Genotype-Imputation Accuracy across Worldwide Human Populations

Lucy Huang, Yun Li, Andrew B. Singleton, John A. Hardy, Gonçalo Abecasis, Noah A. Rosenberg, Paul Scheet

Journal:

The American Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

17

Genome-wide Association Study of Vitamin B6, Vitamin B12, Folate, and Homocysteine Blood Concentrations

Toshiko Tanaka, Paul Scheet, Betti Giusti, Stefania Bandinelli, Maria Grazia Piras, Gianluca Usala, Sandra Lai, Antonella Mulas, Anna Maria Corsi, Anna Vestrini, Francesco Sofi, Anna Maria Gori, Rosan

Journal:

The American Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 29 KB

english, 2009

18

Strengthening the reporting of genetic association studies (STREGA)—an extension of the strengthening the reporting of observational studies in epidemiology (STROBE) statement

Julian Little, Julian P.T. Higgins, John P.A. Ioannidis, David Moher, France Gagnon, Erik von Elm, Muin J. Khoury, Barbara Cohen, George Davey-Smith, Jeremy Grimshaw, Paul Scheet, Marta Gwinn, Robin E

Journal:

Journal of Clinical Epidemiology

Year:

2009

Language:

english

File:

PDF, 208 KB

english, 2009

19

Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation

Matthew Stephens, Paul Scheet

Journal:

The American Journal of Human Genetics

Year:

2005

Language:

english

File:

PDF, 494 KB

english, 2005

20

A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase

Paul Scheet, Matthew Stephens

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 2.85 MB

english, 2006

21

Population structure, migration, and diversifying selection in the Netherlands

Abdellaoui, Abdel, Hottenga, Jouke-Jan, Knijff, Peter de, Nivard, Michel G, Xiao, Xiangjun, Scheet, Paul, Brooks, Andrew, Ehli, Erik A, Hu, Yueshan, Davies, Gareth E, Hudziak, James J, Sullivan, Patri

Journal:

European Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.81 MB

english, 2013

22

Association Between Autozygosity and Major Depression: Stratification Due to Religious Assortment

Abdellaoui, Abdel, Hottenga, Jouke-Jan, Xiao, Xiangjun, Scheet, Paul, Ehli, Erik A., Davies, Gareth E., Hudziak, James J., Smit, Dirk J. A., Bartels, Meike, Willemsen, Gonneke, Brooks, Andrew, Sulliva

Journal:

Behavior Genetics

Year:

2013

Language:

english

File:

PDF, 995 KB

english, 2013

23

A Genome-wide Association Meta-analysis of Preschool Internalizing Problems

Benke, Kelly S., Nivard, Michel G., Velders, Fleur P., Walters, Raymond K., Pappa, Irene, Scheet, Paul A., Xiao, Xiangjun, Ehli, Erik A., Palmer, Lyle J., Whitehouse, Andrew J.O., Verhulst, Frank C.,

Journal:

Journal of the American Academy of Child & Adolescent Psychiatry

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

24

Somatic mutation load of estrogen receptor-positive breast tumors predicts overall survival: an analysis of genome sequence data

Haricharan, Svasti, Bainbridge, Matthew N., Scheet, Paul, Brown, Powel H.

Journal:

Breast Cancer Research and Treatment

Year:

2014

Language:

english

File:

PDF, 788 KB

english, 2014

25

Clonal evolution in breast cancer revealed by single nucleus genome sequencing

Wang, Yong, Waters, Jill, Leung, Marco L., Unruh, Anna, Roh, Whijae, Shi, Xiuqing, Chen, Ken, Scheet, Paul, Vattathil, Selina, Liang, Han, Multani, Asha, Zhang, Hong, Zhao, Rui, Michor, Franziska, Mer

Journal:

Year:

2014

Language:

english

File:

PDF, 5.98 MB

english, 2014

26

Attention-Deficit/Hyperactivity Disorder Polygenic Risk Scores Predict Attention Problems in a Population-Based Sample of Children

Groen-Blokhuis, Maria M., Middeldorp, Christel M., Kan, Kees-Jan, Abdellaoui, Abdel, van Beijsterveldt, Catharina E.M., Ehli, Erik A., Davies, Gareth E., Scheet, Paul A., Xiao, Xiangjun, Hudziak, Jame

Journal:

Journal of the American Academy of Child & Adolescent Psychiatry

Year:

2014

Language:

english

File:

PDF, 714 KB

english, 2014

27

Preliminary whole-exome sequencing reveals mutations that imply common tumorigenicity pathways in multiple endocrine neoplasia type 1 patients

Romero Arenas, Minerva Angélica, Fowler, Richard G., San Lucas, F. Anthony, Shen, Jie, Rich, Thereasa A., Grubbs, Elizabeth G., Lee, Jeffrey E., Scheet, Paul, Perrier, Nancy D., Zhao, Hua

Journal:

Year:

2014

Language:

english

File:

PDF, 501 KB

english, 2014

28

A prospective study of the effects of breastfeeding and FADS2 polymorphisms on cognition and hyperactivity/attention problems

Groen-Blokhuis, Maria M., Franić, S., van Beijsterveldt, Catharina E.M., de Geus, Eco, Bartels, Meike, Davies, Gareth E., Ehli, Erik A., Xiao, Xiangjun, Scheet, Paul A., Althoff, Robert, Hudziak, Jame

Journal:

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Year:

2013

Language:

english

File:

PDF, 330 KB

english, 2013

29

De novo and inherited CNVs in MZ twin pairs selected for discordance and concordance on Attention Problems

Ehli, Erik A, Abdellaoui, Abdel, Hu, Yueshan, Hottenga, Jouke Jan, Kattenberg, Mathijs, van Beijsterveldt, Toos, Bartels, Meike, Althoff, Robert R, Xiao, Xiangjun, Scheet, Paul, de Geus, Eco J, Hudzia

Journal:

European Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 501 KB

english, 2012

30

Intelligence: shared genetic basis between Mendelian disorders and a polygenic trait

Franić, Sanja, Groen-Blokhuis, Maria M, Dolan, Conor V, Kattenberg, Mathijs V, Pool, René, Xiao, Xiangjun, Scheet, Paul A, Ehli, Erik A, Davies, Gareth E, van der Sluis, Sophie, Abdellaoui, Abdel, Han

Journal:

European Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 523 KB

english, 2015

31

Twins, Tissue, and Time: An Assessment of SNPs and CNVs

Scheet, Paul, Ehli, Erik A., Xiao, Xiangjun, van Beijsterveldt, Catharina E. M., Abdellaoui, Abdel, Althoff, Robert R., Hottenga, Jouke Jan, Willemsen, Gonneke, Nelson, Kelly A., Huizenga, Patricia E.

Journal:

Twin Research and Human Genetics

Year:

2012

Language:

english

File:

PDF, 143 KB

english, 2012

32

Identification of Allelic Imbalance with a Statistical Model for Subtle Genomic Mosaicism

Xia, Rui, Vattathil, Selina, Scheet, Paul, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.57 MB

english, 2014

33

Extensive Hidden Genomic Mosaicism Revealed in Normal Tissue

Vattathil, Selina, Scheet, Paul

Journal:

The American Journal of Human Genetics

Year:

2016

Language:

english

File:

PDF, 673 KB

english, 2016

34

Rapid and powerful detection of subtle allelic imbalance from exome sequencing data with hapLOHseq

San Lucas, F. Anthony, Sivakumar, Smruthy, Vattathil, Selina, Fowler, Jerry, Vilar, Eduardo, Scheet, Paul

Journal:

Year:

2016

Language:

english

File:

PDF, 263 KB

english, 2016

35

The role of CDKN2C copy number in sporadic medullary thyroid carcinoma

Grubbs, Elizabeth G, Williams, Michelle D, Scheet, Paul, Vattathil, Selina, Perrier, Nancy, Lee, Jeffrey E, Gagel, Robert F., Hai, Tao, Feng, Lei, Cabanillas, Maria, Cote, Gilbert J.

Journal:

Year:

2016

Language:

english

File:

PDF, 800 KB

english, 2016

36

A meta-analytic framework for detection of genetic interactions

Liu, Yulun, Chen, Yong, Scheet, Paul

Journal:

Genetic Epidemiology

Year:

2016

Language:

english

File:

PDF, 307 KB

english, 2016

37

Can Microsatellite Status of Colorectal Cancer be Reliably Assessed after Neoadjuvant Therapy?

Goldstein, Jennifer B, Wu, William, Borras, Ester, Masand, Gita, Cuddy, Amanda, Mork, Maureen E., Bannon, Sarah, Lynch, Patrick M., Rodriguez-Bigas, Miguel, Taggart, Melissa, Wu, Ji, Scheet, Paul, Kop

Journal:

Clinical Cancer Research

Year:

2017

Language:

english

File:

PDF, 5.16 MB

english, 2017

38

On meta- and mega-analyses for gene-environment interactions

Huang, Jing, Liu, Yulun, Vitale, Steve, Penning, Trevor M., Whitehead, Alexander S., Blair, Ian A., Vachani, Anil, Clapper, Margie L., Muscat, Joshua E., Lazarus, Philip, Scheet, Paul, Moore, Jason H.

Journal:

Genetic Epidemiology

Year:

2017

Language:

english

File:

PDF, 1.08 MB

english, 2017

39

XPAT: a toolkit to conduct cross-platform association studies with heterogeneous sequencing datasets

Yu, Yao, Hu, Hao, Bohlender, Ryan J, Hu, Fulan, Chen, Jiun-Sheng, Holt, Carson, Fowler, Jerry, Guthery, Stephen L, Scheet, Paul, Hildebrandt, Michelle AT, Yandell, Mark, Huff, Chad D

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.93 MB

english, 2017

40

Integrated case–control and somatic-germline interaction analyses of melanoma susceptibility genes

Yu, Yao, Hu, Hao, Chen, Jiun-Sheng, Hu, Fulan, Fowler, Jerry, Scheet, Paul, Zhao, Hua, Huff, Chad D.

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

2018

Language:

english

File:

PDF, 2.33 MB

english, 2018

41

Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform

Deshpande, Aditya, Lang, Wenhua, McDowell, Tina, Sivakumar, Smruthy, Zhang, Jiexin, Wang, Jing, San Lucas, F. Anthony, Fowler, Jerry, Kadara, Humam, Scheet, Paul

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 629 KB

english, 2018

42

Linkage Disequilibrium-Based Quality Control for Large-Scale Genetic Studies

Scheet, Paul, Stephens, Matthew, Allison, David B.

Journal:

Year:

2008

Language:

english

File:

PDF, 407 KB

english, 2008

43

STrengthening the REporting of Genetic Association Studies (STREGA)— An Extension of the STROBE Statement

Little, Julian, Higgins, Julian P.T, Ioannidis, John P.A, Moher, David, Gagnon, France, von Elm, Erik, Khoury, Muin J, Cohen, Barbara, Davey-Smith, George, Grimshaw, Jeremy, Scheet, Paul, Gwinn, Marta

Journal:

Year:

2009

Language:

english

File:

PDF, 179 KB

english, 2009

44

Oral microbiota reveals signs of acculturation in Mexican American women

Hoffman, Kristi L., Hutchinson, Diane S., Fowler, Jerry, Smith, Daniel P., Ajami, Nadim J., Zhao, Hua, Scheet, Paul, Chow, Wong-Ho, Petrosino, Joseph F., Daniel, Carrie R., Crawford, Dana C.

Journal:

Year:

2018

Language:

english

File:

PDF, 14.87 MB

english, 2018

45

Molecular mechanisms of the preventable causes of cancer in the United States

Golemis, Erica A., Scheet, Paul, Beck, Tim N., Scolnick, Ed, Hunter, David J., Hawk, Ernest, Hopkins, Nancy

Journal:

Genes & Development

Year:

2018

Language:

english

File:

PDF, 4.57 MB

english, 2018

46

Directional allelic imbalance profiling and visualization from multi-sample data with RECUR

Jakubek, Yasminka A, San Lucas, F Anthony, Scheet, Paul, Hancock, John

Journal:

Year:

2018

Language:

english

File:

PDF, 321 KB

english, 2018

47

System for Quality-Assured Data Analysis: Flexible, reproducible scientific workflows

Fowler, Jerry, San Lucas, Francis Anthony, Scheet, Paul

Journal:

Genetic Epidemiology

Year:

2018

Language:

english

File:

PDF, 939 KB

english, 2018

48

The Emperor’s New Clothes: Prospective Observational Evaluation of the Association between Initial Vancomycin Exposure and Failure Rates among Adult Hospitalized Patients with MRSA Bloodstream Infections (PROVIDE)

Lodise, Thomas P, Rosenkranz, Susan L, Finnemeyer, Matthew, Evans, Scott, Sims, Matthew, Zervos, Marcus J, Creech, C Buddy, Patel, Pratish C, Keefer, Michael, Riska, Paul, Silveira, Fernanda P, Scheet

Journal:

Clinical Infectious Diseases

Year:

2019

File:

PDF, 952 KB

2019

49

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes

Riquelme, Erick, Zhang, Yu, Zhang, Liangliang, Montiel, Maria, Zoltan, Michelle, Dong, Wenli, Quesada, Pompeyo, Sahin, Ismet, Chandra, Vidhi, San Lucas, Anthony, Scheet, Paul, Xu, Hanwen, Hanash, Sami

Journal:

Year:

2019

File:

PDF, 7.15 MB

2019

50

The BE GONE trial study protocol: a randomized crossover dietary intervention of dry beans targeting the gut microbiome of overweight and obese patients with a history of colorectal polyps or cancer

Zhang, Xiaotao, Browman, Gladys, Siu, Wesley, Basen-Engquist, Karen M., Hanash, Samir M., Hoffman, Kristi L., Okhuysen, Pablo C., Scheet, Paul, Petrosino, Joseph F., Kopetz, Scott, Daniel, Carrie R.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.05 MB

english, 2019